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    K04F10.1 AXH domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 187002, updated on 9-Dec-2024

    Summary

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    Official Symbol
    K04F10.1
    Official Full Name
    AXH domain-containing protein
    Primary source
    WormBase:WBGene00019394
    Locus tag
    CELE_K04F10.1
    See related
    AllianceGenome:WB:WBGene00019394
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1. Orthologous to several human genes including ATXN1L (ataxin 1 like). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See K04F10.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (6365031..6366224)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Vacuolar protein sorting-associated protein 28 homolog Neighboring gene Protein KATNIP homolog Neighboring gene Protein FAM76A Neighboring gene F-box domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AXH domain-containing protein
    NP_491837.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      6365031..6366224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059436.7 → NP_491837.2  AXH domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491837.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44771
      Conserved Domains (1) summary
      smart00536
      Location:121 → 234
      AXH; domain in Ataxins and HMG containing proteins
    Nucleotide Protein
    Heading Accession and Version

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