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    col-72 Col_cuticle_N domain-containing protein;Collagen triple helix repeat protein [ Caenorhabditis elegans ]

    Gene ID: 173698, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-72
    Official Full Name
    Col_cuticle_N domain-containing protein;Collagen triple helix repeat protein
    Primary source
    WormBase:WBGene00000648
    Locus tag
    CELE_W09G10.1
    See related
    AllianceGenome:WB:WBGene00000648
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be part of collagen trimer. Orthologous to human COL24A1 (collagen type XXIV alpha 1 chain). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-72 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003280.10 (3520703..3524197, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene tRNA-Thr Neighboring gene tRNA-Lys Neighboring gene C-type lectin domain-containing protein Neighboring gene tRNA-His Neighboring gene Integration host factor subunit alpha Neighboring gene EF-hand domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrating transcriptomics and behavior tests reveals how the C. elegans responds to copper induced aging. Zhang Y, et al. Ecotoxicol Environ Saf, 2021 Oct 1. PMID 34265532
    2. The C. elegans gene gvd-1 promotes late larval development and germ cell proliferation. Ezhil Buvani AP, et al. Biol Open, 2023 Jul 15. PMID 37310364, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Col_cuticle_N domain-containing protein;Collagen triple helix repeat protein
    NP_001368019.1
    • Confirmed by transcript evidence
    NP_001368020.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      3520703..3524197 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001381370.2 → NP_001368020.1  Collagen triple helix repeat protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      D6VP96

    2. NM_001381369.1 → NP_001368019.1  Col_cuticle_N domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L0P1
    Nucleotide Protein
    Heading Accession and Version

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