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    algX alginate biosynthesis protein AlgX [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 878551, updated on 10-Oct-2024

    Summary

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    Gene symbol
    algX
    Gene description
    alginate biosynthesis protein AlgX
    Locus tag
    PA3546
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (3971586..3973010)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene alginate biosynthesis protein AlgK Neighboring gene alginate production protein AlgE Neighboring gene alginate-c5-mannuronan-epimerase AlgG Neighboring gene alginate lyase Neighboring gene alginate o-acetylase AlgI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression, purification, crystallization and preliminary X-ray analysis of Pseudomonas aeruginosa AlgX. Weadge JT, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2010 May 1. PMID 20445266, Free PMC Article
    2. AlgX is a periplasmic protein required for alginate biosynthesis in Pseudomonas aeruginosa. Robles-Price A, et al. J Bacteriol, 2004 Nov. PMID 15489449, Free PMC Article
    3. Alginate synthesis in Pseudomonas aeruginosa: the role of AlgL (alginate lyase) and AlgX. Monday SR, et al. J Bacteriol, 1996 Feb. PMID 8550492, Free PMC Article
    4. P. aeruginosa SGNH hydrolase-like proteins AlgJ and AlgX have similar topology but separate and distinct roles in alginate acetylation. Baker P, et al. PLoS Pathog, 2014 Aug. PMID 25165982, Free PMC Article
    5. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within alginic acid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within alginic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to stimulus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alginate biosynthesis protein AlgX
    NP_252236.1
    • Product name confidence: class 1 (Function experimentally demonstrated in P. aeruginosa)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3971586..3973010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_252236.1 alginate biosynthesis protein AlgX [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_252236.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3M5DX00
      Conserved Domains (2) summary
      cd14441
      Location:43 → 348
      AlgX_N; N-terminal catalytic domain of the putative alginate O-acetyltranferase AlgX
      pfam16824
      Location:346 → 468
      CBM_26; C-terminal carbohydrate-binding module
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q51372.2

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