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    cifR [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 878998, updated on 11-Sep-2024

    Summary

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    Official Symbol
    cifR
    Primary source
    PseudoCap:PA2931
    Locus tag
    PA2931
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (3286624..3287214, complement)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene transcriptional regulator Neighboring gene morphinone reductase Neighboring gene major facilitator superfamily transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cif is negatively regulated by the TetR family repressor CifR. MacEachran DP, et al. Infect Immun, 2008 Jul. PMID 18458065, Free PMC Article
    2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
    5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CifR protein
    NP_251621.1
    • Product name confidence: class 1: Function experimentally demonstrated in P. aeruginosa.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3286624..3287214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_251621.1 CifR protein [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_251621.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q9HZR6
      Conserved Domains (1) summary
      COG1309
      Location:1 → 194
      AcrR; DNA-binding transcriptional regulator, AcrR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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