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    LINC01585 long intergenic non-protein coding RNA 1585 [ Homo sapiens (human) ]

    Gene ID: 101929765, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01585provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1585provided by HGNC
    Primary source
    HGNC:HGNC:51432
    See related
    Ensembl:ENSG00000245479 AllianceGenome:HGNC:51432
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01585 in Genome Data Viewer
    Location:
    15q26.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (90660234..90664954)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (88418564..88423286)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (91203465..91208185)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene CREB regulated transcription coactivator 3 Neighboring gene uncharacterized LOC124903554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10081 Neighboring gene CRTC3 antisense RNA 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:91183956-91185155 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:91189835-91190018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10082 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10083 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91203621-91204149 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6825 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10088 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6826 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10087 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91226288-91226788 Neighboring gene small nucleolar RNA SNORD18 Neighboring gene BLM RecQ like helicase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6827 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91359631-91360462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91360463-91361292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:91368815-91369414 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10090 Neighboring gene uncharacterized LOC105370969 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:91383569-91384223 Neighboring gene Sharpr-MPRA regulatory region 4312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:91388069-91388685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10092 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10093

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120371.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC038778
      Related
      ENST00000500496.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      90660234..90664954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      88418564..88423286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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