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    C6orf62 chromosome 6 open reading frame 62 [ Homo sapiens (human) ]

    Gene ID: 81688, updated on 10-Dec-2024

    Summary

    Official Symbol
    C6orf62provided by HGNC
    Official Full Name
    chromosome 6 open reading frame 62provided by HGNC
    Primary source
    HGNC:HGNC:20998
    See related
    Ensembl:ENSG00000112308 AllianceGenome:HGNC:20998
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    XTP12; dJ30M3.2; Nbla00237
    Expression
    Ubiquitous expression in testis (RPKM 42.5), spleen (RPKM 41.6) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See C6orf62 in Genome Data Viewer
    Location:
    6p22.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (24704861..24720836, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (24575985..24592053, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (24705089..24721064, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901279 Neighboring gene acyl-CoA thioesterase 13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:24682160-24682927 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:24682928-24683696 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:24683697-24684463 Neighboring gene uncharacterized LOC124901278 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:24699525-24699689 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:24720063-24720856 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:24721651-24722444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24157 Neighboring gene long intergenic non-protein coding RNA 2828 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:24754099-24754309 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:24758062-24758263 Neighboring gene AP3S1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24158 Neighboring gene geminin DNA replication inhibitor

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Interactions

    General gene information

    Clone Names

    • FLJ12619, DKFZp564G182

    Gene Ontology Provided by GOA

    General protein information

    Preferred Names
    uncharacterized protein C6orf62
    Names
    HBV X-transactivated gene 12 protein
    HBV X-transactivated protein 12
    HBV XAg-transactivated protein 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001410835.1NP_001397764.1  uncharacterized protein C6orf62 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL031775, AL133264
      Consensus CDS
      CCDS93869.1
      UniProtKB/TrEMBL
      B4DWX7
      Related
      ENSP00000367342.3, ENST00000378102.3
    2. NM_030939.5NP_112201.1  uncharacterized protein C6orf62 isoform 1

      See identical proteins and their annotated locations for NP_112201.1

      Status: VALIDATED

      Source sequence(s)
      AL133264, BC040260, BC047866
      Consensus CDS
      CCDS4559.1
      UniProtKB/Swiss-Prot
      Q3LIB6, Q5JVZ2, Q5JVZ3, Q6IA63, Q9GZU0, Q9H1Z2
      Related
      ENSP00000367359.4, ENST00000378119.9
      Conserved Domains (1) summary
      pfam15130
      Location:1226
      DUF4566; Domain of unknown function (DUF4566)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      24704861..24720836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047419384.1XP_047275340.1  uncharacterized protein C6orf62 isoform X2

    2. XM_005249433.5XP_005249490.1  uncharacterized protein C6orf62 isoform X1

      Conserved Domains (1) summary
      pfam15130
      Location:1143
      DUF4566; Domain of unknown function (DUF4566)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      24575985..24592053 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054356494.1XP_054212469.1  uncharacterized protein C6orf62 isoform X1

    2. XM_054356495.1XP_054212470.1  uncharacterized protein C6orf62 isoform X2

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