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    LOC105375875 uncharacterized LOC105375875 [ Homo sapiens (human) ]

    Gene ID: 105375875, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105375875
    Gene description
    uncharacterized LOC105375875
    See related
    Ensembl:ENSG00000253205
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105375875 in Genome Data Viewer
    Location:
    8q12.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (63384825..63417922, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (63810010..63843107, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (64297383..64330480, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 135, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27453 Neighboring gene uncharacterized LOC105375873 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:64196998-64197189 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:64238437-64239102 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:64239103-64239767 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:64275231-64275762 Neighboring gene Sharpr-MPRA regulatory region 7401 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27454 Neighboring gene interferon induced transmembrane protein 8 pseudogene Neighboring gene uncharacterized LOC105375874 Neighboring gene uncharacterized LOC102724612

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • CTD-3046C4.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188106.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011124, AC103688

    2. NR_188107.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011124, AC103688
      Related
      ENST00000521221.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      63384825..63417922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      63810010..63843107 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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