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    LINC01492 long intergenic non-protein coding RNA 1492 [ Homo sapiens (human) ]

    Gene ID: 101928496, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01492provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1492provided by HGNC
    Primary source
    HGNC:HGNC:51149
    See related
    Ensembl:ENSG00000225564 AllianceGenome:HGNC:51149
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01492 in Genome Data Viewer
    Location:
    9q31.1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (103140528..103325033, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (115314201..115498723, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (105902810..106087315, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene cylicin 2 Neighboring gene uncharacterized LOC105376191 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:105948847-105949410 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:105949411-105949974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:105999467-106000068 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:106000069-106000669 Neighboring gene NANOG hESC enhancer GRCh37_chr9:106027846-106028395 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_104292 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_104318 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:106233209-106234408 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:106477063-106477652 Neighboring gene RNA, 5S ribosomal pseudogene 291 Neighboring gene uncharacterized LOC105376192

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study of Alzheimer's disease with psychotic symptoms.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121578.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL589823, AL589844
      Related
      ENST00000411575.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      103140528..103325033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      115314201..115498723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)