U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tp53i11 tumor protein p53 inducible protein 11 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311209, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tp53i11provided by RGD
    Official Full Name
    tumor protein p53 inducible protein 11provided by RGD
    Primary source
    RGD:1308395
    See related
    EnsemblRapid:ENSRNOG00000008738 AllianceGenome:RGD:1308395
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Trp53i11
    Summary
    Predicted to be located in membrane. Orthologous to human TP53I11 (tumor protein p53 inducible protein 11). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 174.5), Thymus (RPKM 169.6) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tp53i11 in Genome Data Viewer
    Location:
    3q31
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (99600213..99615462)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (79144824..79160056)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (82081838..82097064)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 11 Neighboring gene uncharacterized LOC134486128 Neighboring gene ribosomal oxygenase 2, pseudogene 5 Neighboring gene tetraspanin 18 Neighboring gene uncharacterized LOC120101602

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    tumor protein p53-inducible protein 11
    Names
    p53-induced gene 11 protein
    transformation related protein 53 inducible protein 11

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107749.3 → NP_001101219.1  tumor protein p53-inducible protein 11

      See identical proteins and their annotated locations for NP_001101219.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      B3DMA0
      Conserved Domains (1) summary
      pfam14936
      Location:10 → 188
      p53-inducible11; tumor protein p53-inducible protein 11

    2. NM_001399493.2 → NP_001386422.1  tumor protein p53-inducible protein 11

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      B3DMA0
      Conserved Domains (1) summary
      pfam14936
      Location:10 → 188
      p53-inducible11; tumor protein p53-inducible protein 11

    3. NM_001399494.2 → NP_001386423.1  tumor protein p53-inducible protein 11

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      B3DMA0
      Conserved Domains (1) summary
      pfam14936
      Location:10 → 188
      p53-inducible11; tumor protein p53-inducible protein 11

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      99600213..99615462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006234571.5 → XP_006234633.1  tumor protein p53-inducible protein 11 isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZW55
      Conserved Domains (1) summary
      pfam14936
      Location:18 → 196
      p53-inducible11; tumor protein p53-inducible protein 11

    2. XM_063283675.1 → XP_063139745.1  tumor protein p53-inducible protein 11 isoform X3

    3. XM_006234569.5 → XP_006234631.1  tumor protein p53-inducible protein 11 isoform X1

      See identical proteins and their annotated locations for XP_006234631.1

      UniProtKB/TrEMBL
      A0A8L2QSJ1, A6HNI4
      Related
      ENSRNOP00000053834.3, ENSRNOT00000057001.5
      Conserved Domains (1) summary
      pfam14936
      Location:25 → 203
      p53-inducible11; tumor protein p53-inducible protein 11
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B3DMA0.1 GenPept UniProtKB/Swiss-Prot:B3DMA0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools