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    CIPC CLOCK interacting pacemaker [ Sus scrofa (pig) ]

    Gene ID: 100157174, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CIPCprovided by VGNC
    Official Full Name
    CLOCK interacting pacemakerprovided by VGNC
    Primary source
    VGNC:VGNC:97929
    See related
    Ensembl:ENSSSCG00000029760
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    KIAA1737
    Expression
    Ubiquitous expression in psoas major muscle (RPKM 10.3), longissimus dorsi muscle (RPKM 9.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CIPC in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (100180389..100199529)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (106212583..106229525)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102167901 Neighboring gene uncharacterized LOC106504515 Neighboring gene zinc finger DHHC-type palmitoyltransferase 22 Neighboring gene transmembrane protein 63C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CLOCK-interacting pacemaker

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      100180389..100199529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013978333.2 → XP_013833787.2  CLOCK-interacting pacemaker

      UniProtKB/TrEMBL
      A0A287AZT9, A0A4X1T628, A0A8D0NW86, A0A8D1C4X5, A0A8D1N2B6, I3LEK9
      Conserved Domains (1) summary
      pfam15800
      Location:38 → 368
      CiPC; Clock interacting protein circadian

    2. XM_013978334.2 → XP_013833788.2  CLOCK-interacting pacemaker

      UniProtKB/TrEMBL
      A0A287AZT9, A0A4X1T628, A0A8D0NW86, A0A8D1C4X5, A0A8D1N2B6, I3LEK9
      Related
      ENSSSCP00000049475.3, ENSSSCT00000037449.3
      Conserved Domains (1) summary
      pfam15800
      Location:38 → 368
      CiPC; Clock interacting protein circadian

    3. XM_013978335.2 → XP_013833789.2  CLOCK-interacting pacemaker

      UniProtKB/TrEMBL
      A0A287AZT9, A0A4X1T628, A0A8D0NW86, A0A8D1C4X5, A0A8D1N2B6, I3LEK9
      Conserved Domains (1) summary
      pfam15800
      Location:38 → 368
      CiPC; Clock interacting protein circadian

    4. XM_013978337.2 → XP_013833791.2  CLOCK-interacting pacemaker

      UniProtKB/TrEMBL
      A0A287AZT9, A0A4X1T628, A0A8D0NW86, A0A8D1C4X5, A0A8D1N2B6, I3LEK9
      Conserved Domains (1) summary
      pfam15800
      Location:38 → 368
      CiPC; Clock interacting protein circadian

    5. XM_013978336.2 → XP_013833790.2  CLOCK-interacting pacemaker

      UniProtKB/TrEMBL
      A0A287AZT9, A0A4X1T628, A0A8D0NW86, A0A8D1C4X5, A0A8D1N2B6, I3LEK9
      Conserved Domains (1) summary
      pfam15800
      Location:38 → 368
      CiPC; Clock interacting protein circadian
    Nucleotide Protein
    Heading Accession and Version

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