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    GANAB glucosidase II alpha subunit [ Sus scrofa (pig) ]

    Gene ID: 396938, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GANABprovided by VGNC
    Official Full Name
    glucosidase II alpha subunitprovided by VGNC
    Primary source
    VGNC:VGNC:88344
    See related
    Ensembl:ENSSSCG00000030653
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    G2AN
    Expression
    Ubiquitous expression in ovary (RPKM 56.4), kidney (RPKM 45.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See GANAB in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (9100672..9118396)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (8446419..8463996)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene chromosome 2 C11orf98 homolog Neighboring gene integrator complex subunit 5 Neighboring gene beta-1,3-glucuronyltransferase 3 Neighboring gene retinal outer segment membrane protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Cell type-specific post-Golgi apparatus localization of a "resident" endoplasmic reticulum glycoprotein, glucosidase II. Brada D, et al. J Cell Biol, 1990 Feb. PMID 2404989, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glucan 1,3-alpha-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-glycan processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of glucosidase II complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neutral alpha-glucosidase AB
    Names
    alpha-glucosidase 2
    glucosidase II subunit alpha
    NP_999069.1
    XP_005660829.1
    XP_020936320.1
    XP_020936328.1
    XP_020936333.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213904.1 → NP_999069.1  neutral alpha-glucosidase AB precursor

      See identical proteins and their annotated locations for NP_999069.1

      Status: PROVISIONAL

      Source sequence(s)
      U71273
      UniProtKB/Swiss-Prot
      P79403
      UniProtKB/TrEMBL
      A0A480TZM0, A0A4X1VN86
      Conserved Domains (3) summary
      cd06603
      Location:384 → 851
      GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
      cd14752
      Location:242 → 384
      GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
      pfam01055
      Location:365 → 810
      Glyco_hydro_31; Glycosyl hydrolases family 31

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      9100672..9118396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021080661.1 → XP_020936320.1  neutral alpha-glucosidase AB isoform X1

      UniProtKB/TrEMBL
      A0A8D1WJM9
      Conserved Domains (3) summary
      cd06603
      Location:406 → 914
      GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
      cd14752
      Location:264 → 406
      GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
      pfam17137
      Location:888 → 959
      DUF5110; Domain of unknown function (DUF5110)

    2. XM_021080669.1 → XP_020936328.1  neutral alpha-glucosidase AB isoform X2

      UniProtKB/TrEMBL
      A0A480TZM0, A0A4X1VN86
      Conserved Domains (3) summary
      cd06603
      Location:384 → 892
      GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
      cd14752
      Location:242 → 384
      GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
      pfam17137
      Location:866 → 937
      DUF5110; Domain of unknown function (DUF5110)

    3. XM_005660772.3 → XP_005660829.1  neutral alpha-glucosidase AB isoform X3

      UniProtKB/TrEMBL
      A0A287B478, A0A4X1VKG9, A0A8D1WJM9, I3LNH3
      Related
      ENSSSCP00000025647.2, ENSSSCT00000023479.4
      Conserved Domains (3) summary
      cd06603
      Location:406 → 873
      GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
      cd14752
      Location:264 → 406
      GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
      pfam01055
      Location:387 → 832
      Glyco_hydro_31; Glycosyl hydrolases family 31

    4. XM_021080674.1 → XP_020936333.1  neutral alpha-glucosidase AB isoform X4

      UniProtKB/TrEMBL
      A0A286ZZ98, A0A480UC16, A0A4X1VGF5, A0A8D1XJ84
      Related
      ENSSSCP00000076092.1, ENSSSCT00000106435.1
      Conserved Domains (3) summary
      cd06603
      Location:287 → 754
      GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
      cd14752
      Location:145 → 287
      GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
      pfam17137
      Location:730 → 799
      DUF5110; Domain of unknown function (DUF5110)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P79403.1 GenPept UniProtKB/Swiss-Prot:P79403

    Gene LinkOut

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