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    MARCKS myristoylated alanine rich protein kinase C substrate [ Sus scrofa (pig) ]

    Gene ID: 100517207, updated on 17-Aug-2024

    Summary

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    Official Symbol
    MARCKSprovided by VGNC
    Official Full Name
    myristoylated alanine rich protein kinase C substrateprovided by VGNC
    Primary source
    VGNC:VGNC:90024
    See related
    Ensembl:ENSSSCG00000037803
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 169.0), ovary (RPKM 93.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See MARCKS in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (79789796..79795895)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (89851268..89857394)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene ret finger protein like 4B Neighboring gene uncharacterized LOC102159376 Neighboring gene craniofacial development protein 1 pseudogene Neighboring gene histone deacetylase 2 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myristoylated alanine-rich C-kinase substrate

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      79789796..79795895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021091501.1 → XP_020947160.1  myristoylated alanine-rich C-kinase substrate

      UniProtKB/TrEMBL
      A0A287BRL8, A0A8D1IP97
      Related
      ENSSSCP00000059154.1, ENSSSCT00000038674.3
      Conserved Domains (1) summary
      pfam02063
      Location:2 → 322
      MARCKS; MARCKS family
    Nucleotide Protein
    Heading Accession and Version

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