RNF114 ring finger protein 114 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: RNF114provided by VGNC
Official Full Name: ring finger protein 114provided by VGNC
Primary source: VGNC:VGNC:108733
See related: Ensembl:ENSSSCG00000036129
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: ZFP313; ZNF313
Expression: Ubiquitous expression in ovary (RPKM 71.6), lung (RPKM 63.3) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	17	NC_010459.5 (51513646..51527783)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	Unplaced Scaffold	NW_003540866.1 (7372..15973)

Chromosome 17 - NC_010459.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

DCAF13 and RNF114 participate in the regulation of early porcine embryo development.
Title: DCAF13 and RNF114 participate in the regulation of early porcine embryo development.
Proteasomal degradation of nonstructural protein 12 by RNF114 suppresses porcine reproductive and respiratory syndrome virus replication.
Title: Proteasomal degradation of nonstructural protein 12 by RNF114 suppresses porcine reproductive and respiratory syndrome virus replication.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein polyubiquitination	IEA Inferred from Electronic Annotation more info	PubMed
involved_in ubiquitin-dependent protein catabolic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: E3 ubiquitin-protein ligase RNF114

Names: RING-type E3 ubiquitin transferase RNF114; zinc finger protein 313

NP_001001869.1

EC 2.3.2.27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001001869.1 → NP_001001869.1 E3 ubiquitin-protein ligase RNF114

See identical proteins and their annotated locations for NP_001001869.1

Status: PROVISIONAL

Source sequence(s)

AY606064

UniProtKB/Swiss-Prot

Q6J1I8

UniProtKB/TrEMBL

A0A8D1STS4

Related

ENSSSCP00000049061.1, ENSSSCT00000044278.3

Conserved Domains (2) summary

cd00162
Location:28 → 71

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

pfam05605
Location:140 → 199

zf-Di19; Drought induced 19 protein (Di19), zinc-binding