U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SERTAD2 SERTA domain containing 2 [ Sus scrofa (pig) ]

    Gene ID: 100518606, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SERTAD2provided by VGNC
    Official Full Name
    SERTA domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:92750
    See related
    Ensembl:ENSSSCG00000037002
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 7.8), spleen (RPKM 6.5) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SERTAD2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (77192570..77317327)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (81032357..81155707)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 1 member 4 Neighboring gene uncharacterized LOC102160963 Neighboring gene aftiphilin Neighboring gene galectin like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SERTA domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      77192570..77317327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005662514.3 → XP_005662571.2  SERTA domain-containing protein 2

      UniProtKB/TrEMBL
      A0A287AI46, A0A8D1XYF6
      Conserved Domains (1) summary
      pfam06031
      Location:40 → 75
      SERTA; SERTA motif

    2. XM_003125089.3 → XP_003125137.2  SERTA domain-containing protein 2

      UniProtKB/TrEMBL
      A0A287AI46, A0A8D1XYF6
      Related
      ENSSSCP00000043088.1, ENSSSCT00000051501.3
      Conserved Domains (1) summary
      pfam06031
      Location:40 → 75
      SERTA; SERTA motif

    3. XM_013996103.2 → XP_013851557.2  SERTA domain-containing protein 2

      UniProtKB/TrEMBL
      A0A287AI46, A0A8D1XYF6
      Related
      ENSSSCP00000064021.1, ENSSSCT00000075959.1
      Conserved Domains (1) summary
      pfam06031
      Location:40 → 75
      SERTA; SERTA motif
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.