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    STAMBPL1 STAM binding protein like 1 [ Sus scrofa (pig) ]

    Gene ID: 100152651, updated on 17-Aug-2024

    Summary

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    Official Symbol
    STAMBPL1provided by VGNC
    Official Full Name
    STAM binding protein like 1provided by VGNC
    Primary source
    VGNC:VGNC:93527
    See related
    Ensembl:ENSSSCG00000010446
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 4.1), psoas major muscle (RPKM 1.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See STAMBPL1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (100798096..100859576)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (109782799..109844285)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene lipase member K Neighboring gene lipase member N Neighboring gene lipase family member M Neighboring gene ankyrin repeat domain 22 Neighboring gene actin alpha 2, smooth muscle Neighboring gene Fas cell surface death receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly. Fahrenkrug SC, et al. Mamm Genome, 2002 Aug. PMID 12226715
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal-dependent deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K63-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AMSH-like protease
    NP_001230272.1
    XP_020927540.1
    XP_020927541.1
    XP_020927542.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243343.1 → NP_001230272.1  AMSH-like protease

      Status: VALIDATED

      Source sequence(s)
      AK352067, BE234881
      UniProtKB/TrEMBL
      A0A480Y3D5, A0A4X1V134, A0A8D0WAA3, A0A8D1LUS1, A0A8D1PAD8
      Related
      ENSSSCP00000063748.1, ENSSSCT00000083882.2
      Conserved Domains (3) summary
      cd08066
      Location:266 → 436
      MPN_AMSH_like; Mov34/MPN/PAD-1 family
      pfam08969
      Location:22 → 129
      USP8_dimer; USP8 dimerisation domain
      cl27006
      Location:109 → 197
      Trigger_N; Bacterial trigger factor protein (TF)

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      100798096..100859576
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021071883.1 → XP_020927542.1  AMSH-like protease isoform X2

      UniProtKB/TrEMBL
      A0A4X1V450, A0A8D0W9V4, A0A8D1LTA3, F1SCY8
      Related
      ENSSSCP00000011134.3, ENSSSCT00000011431.5
      Conserved Domains (3) summary
      cd08066
      Location:234 → 404
      MPN_AMSH_like; Mov34/MPN/PAD-1 family
      pfam08969
      Location:22 → 131
      USP8_dimer; USP8 dimerisation domain
      cl27006
      Location:102 → 165
      Trigger_N; Bacterial trigger factor protein (TF)

    2. XM_021071881.1 → XP_020927540.1  AMSH-like protease isoform X1

      UniProtKB/TrEMBL
      A0A480Y3D5, A0A4X1V134, A0A8D0WAA3, A0A8D1LUS1, A0A8D1PAD8
      Conserved Domains (3) summary
      cd08066
      Location:266 → 436
      MPN_AMSH_like; Mov34/MPN/PAD-1 family
      pfam08969
      Location:22 → 129
      USP8_dimer; USP8 dimerisation domain
      cl27006
      Location:109 → 197
      Trigger_N; Bacterial trigger factor protein (TF)

    3. XM_021071882.1 → XP_020927541.1  AMSH-like protease isoform X1

      UniProtKB/TrEMBL
      A0A480Y3D5, A0A4X1V134, A0A8D0WAA3, A0A8D1LUS1, A0A8D1PAD8
      Conserved Domains (3) summary
      cd08066
      Location:266 → 436
      MPN_AMSH_like; Mov34/MPN/PAD-1 family
      pfam08969
      Location:22 → 129
      USP8_dimer; USP8 dimerisation domain
      cl27006
      Location:109 → 197
      Trigger_N; Bacterial trigger factor protein (TF)
    Nucleotide Protein
    Heading Accession and Version

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