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    RABAC1 Rab acceptor 1 [ Sus scrofa (pig) ]

    Gene ID: 595125, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RABAC1provided by VGNC
    Official Full Name
    Rab acceptor 1provided by VGNC
    Primary source
    VGNC:VGNC:92043
    See related
    Ensembl:ENSSSCG00000003046
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 234.6), ovary (RPKM 216.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RABAC1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (49933439..49936376)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (45951837..45954761)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene zinc finger protein 574 Neighboring gene glutamate ionotropic receptor kainate type subunit 5 Neighboring gene ATPase Na+/K+ transporting subunit alpha 3 Neighboring gene ETS repressor factor like Neighboring gene Rho guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC110260993

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prenylated Rab acceptor protein 1
    Names
    PRA1 family protein 1
    PRA1 family protein 2

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031795.1 → NP_001026965.1  prenylated Rab acceptor protein 1

      See identical proteins and their annotated locations for NP_001026965.1

      Status: PROVISIONAL

      Source sequence(s)
      AY996815
      UniProtKB/Swiss-Prot
      Q52NJ0
      UniProtKB/TrEMBL
      A0A4X1SFW3, A0A5G2QIM1, A0A8D1QK64
      Conserved Domains (1) summary
      pfam03208
      Location:40 → 173
      PRA1; PRA1 family protein

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      49933439..49936376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013988634.2 → XP_013844088.1  prenylated Rab acceptor protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SFW3, A0A4X1SGI1, A0A5G2QIM1, A0A5G2R295, A0A8D1EL12, A0A8D1QK64
      Related
      ENSSSCP00000071224.1, ENSSSCT00000067025.2
      Conserved Domains (1) summary
      pfam03208
      Location:40 → 173
      PRA1; PRA1 family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q52NJ0.1 GenPept UniProtKB/Swiss-Prot:Q52NJ0

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