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    MRPL15 mitochondrial ribosomal protein L15 [ Sus scrofa (pig) ]

    Gene ID: 100155047, updated on 17-Aug-2024

    Summary

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    Official Symbol
    MRPL15provided by VGNC
    Official Full Name
    mitochondrial ribosomal protein L15provided by VGNC
    Primary source
    VGNC:VGNC:98820
    See related
    Ensembl:ENSSSCG00000030578
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 34.9), psoas major muscle (RPKM 27.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See MRPL15 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (77069074..77083595, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (84142552..84149289, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 17 Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene lysophospholipase 1 Neighboring gene transcription elongation factor A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL15m; 39S ribosomal protein L15, mitochondrial
    NP_001230457.1
    XP_020944223.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243528.1 → NP_001230457.1  large ribosomal subunit protein uL15m

      See identical proteins and their annotated locations for NP_001230457.1

      Status: VALIDATED

      Source sequence(s)
      AK236429, EW153234, FS643938
      UniProtKB/TrEMBL
      A0A5G2RG26, A0A8D0HMG9, A0A8D0TE03, A0A8D1B8Z5, A0A8D1DB84
      Conserved Domains (1) summary
      pfam00828
      Location:53 → 176
      Ribosomal_L27A; Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      77069074..77083595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021088564.1 → XP_020944223.1  39S ribosomal protein L15, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A5G2RG26, A0A8D0HMG9, A0A8D0TE03, A0A8D1B8Z5, A0A8D1DB84
      Related
      ENSSSCP00000073877.1, ENSSSCT00000066947.1
      Conserved Domains (1) summary
      pfam00828
      Location:53 → 176
      Ribosomal_L27A; Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
    Nucleotide Protein
    Heading Accession and Version

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