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    BSP1 binder of sperm 1 [ Sus scrofa (pig) ]

    Gene ID: 396806, updated on 16-Nov-2023

    Summary

    Gene symbol
    BSP1
    Gene description
    binder of sperm 1
    See related
    Ensembl:ENSSSCG00000003053
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    PB1
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See BSP1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (50278750..50280780)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (46138657..46140689)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507598 Neighboring gene CD177 molecule Neighboring gene testis expressed 101 Neighboring gene 60S ribosomal protein L39 pseudogene Neighboring gene LY6/PLAUR domain containing 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in sperm capacitation IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    seminal plasma protein pB1
    Names
    DQH protein
    Protein DQH
    pAIF-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213832.1NP_998997.1  seminal plasma protein pB1 precursor

      See identical proteins and their annotated locations for NP_998997.1

      Status: PROVISIONAL

      Source sequence(s)
      AF047026
      UniProtKB/Swiss-Prot
      O46615, P80964
      UniProtKB/TrEMBL
      A0A2C9F357, A0A4X1W3D7, A0A8D0IVH5
      Related
      ENSSSCP00000003307.3, ENSSSCT00000003390.4
      Conserved Domains (1) summary
      smart00059
      Location:84130
      FN2; Fibronectin type 2 domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      50278750..50280780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)