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    GASK1B golgi associated kinase 1B [ Sus scrofa (pig) ]

    Gene ID: 100515440, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GASK1Bprovided by VGNC
    Official Full Name
    golgi associated kinase 1Bprovided by VGNC
    Primary source
    VGNC:VGNC:88362
    See related
    Ensembl:ENSSSCG00000008873
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    FAM198B
    Expression
    Ubiquitous expression in heart (RPKM 21.1), lung (RPKM 14.8) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See GASK1B in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (47036905..47133914, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (49264506..49361184, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504649 Neighboring gene uncharacterized LOC106504650 Neighboring gene uncharacterized LOC100516145 Neighboring gene uncharacterized LOC110262097 Neighboring gene transmembrane protein 144 Neighboring gene 40S ribosomal protein SA-like Neighboring gene relaxin family peptide receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAM198B
    Names
    family with sequence similarity 198 member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      47036905..47133914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013978683.2 → XP_013834137.1  protein FAM198B isoform X1

      UniProtKB/TrEMBL
      A0A480ZIZ9, A0A4X1U4G4, A0A8D0IT39, A0A8D1YNC3
      Related
      ENSSSCP00000009465.3, ENSSSCT00000009714.5
      Conserved Domains (1) summary
      pfam15051
      Location:203 → 518
      FAM198; FAM198 protein

    2. XM_005666658.3 → XP_005666715.1  protein FAM198B isoform X2

      UniProtKB/TrEMBL
      A0A8D0QQL9, F1RW93
      Conserved Domains (1) summary
      pfam15051
      Location:203 → 465
      FAM198; FAM198 protein

    3. XM_003482392.4 → XP_003482440.1  protein FAM198B isoform X1

      UniProtKB/TrEMBL
      A0A480ZIZ9, A0A4X1U4G4, A0A8D0IT39, A0A8D1YNC3
      Conserved Domains (1) summary
      pfam15051
      Location:203 → 518
      FAM198; FAM198 protein

    4. XM_005666656.3 → XP_005666713.1  protein FAM198B isoform X1

      UniProtKB/TrEMBL
      A0A480ZIZ9, A0A4X1U4G4, A0A8D0IT39, A0A8D1YNC3
      Conserved Domains (1) summary
      pfam15051
      Location:203 → 518
      FAM198; FAM198 protein
    Nucleotide Protein
    Heading Accession and Version

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