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    KGD4 alpha-ketoglutarate dehydrogenase subunit 4 [ Sus scrofa (pig) ]

    Gene ID: 100516116, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KGD4provided by VGNC
    Official Full Name
    alpha-ketoglutarate dehydrogenase subunit 4provided by VGNC
    Primary source
    VGNC:VGNC:90397
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    MRPS36
    Expression
    Ubiquitous expression in heart (RPKM 65.8), psoas major muscle (RPKM 64.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See KGD4 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (47386412..47405342)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (51279820..51298746)

    Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene mesoderm-specific transcript homolog protein pseudogene Neighboring gene uncharacterized LOC102160395 Neighboring gene centromere protein H Neighboring gene cyclin dependent kinase 7 Neighboring gene coiled-coil domain containing 125 Neighboring gene adenylate kinase 6 Neighboring gene TATA-box binding protein associated factor 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in 2-oxoglutarate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    28S ribosomal protein S36, mitochondrial
    Names
    mitochondrial ribosomal protein S36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

      Range
      47386412..47405342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003134022.5 → XP_003134070.2  28S ribosomal protein S36, mitochondrial

      UniProtKB/TrEMBL
      A0A480SMQ1, A0A4X1UK37, A0A8D0NVV3, A0A8D0S3P5
    Nucleotide Protein
    Heading Accession and Version

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