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    CDC42EP3 CDC42 effector protein 3 [ Sus scrofa (pig) ]

    Gene ID: 100521443, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CDC42EP3provided by VGNC
    Official Full Name
    CDC42 effector protein 3provided by VGNC
    Primary source
    VGNC:VGNC:86457
    See related
    Ensembl:ENSSSCG00000021359
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 7.2), subcutaneous adipose (RPKM 5.6) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CDC42EP3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (102537662..102567669)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (108935436..108959926, complement)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene cytochrome P450 family 1 subfamily B member 1 Neighboring gene regulator of microtubule dynamics 2 Neighboring gene uncharacterized LOC110255304 Neighboring gene uncharacterized LOC102161945 Neighboring gene glutaminyl-peptide cyclotransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    cdc42 effector protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      102537662..102567669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003125224.6 → XP_003125272.1  cdc42 effector protein 3

      See identical proteins and their annotated locations for XP_003125272.1

      UniProtKB/TrEMBL
      A0A4X1T096, F1S4Q9
      Related
      ENSSSCP00000072763.1, ENSSSCT00000082605.2
      Conserved Domains (2) summary
      pfam00786
      Location:30 → 83
      PBD; P21-Rho-binding domain
      pfam14957
      Location:102 → 253
      BORG_CEP; Cdc42 effector

    2. XM_005662621.3 → XP_005662678.1  cdc42 effector protein 3

      See identical proteins and their annotated locations for XP_005662678.1

      UniProtKB/TrEMBL
      A0A4X1T096, F1S4Q9
      Related
      ENSSSCP00000069776.1, ENSSSCT00000074788.1
      Conserved Domains (2) summary
      pfam00786
      Location:30 → 83
      PBD; P21-Rho-binding domain
      pfam14957
      Location:102 → 253
      BORG_CEP; Cdc42 effector

    3. XM_005662622.3 → XP_005662679.1  cdc42 effector protein 3

      See identical proteins and their annotated locations for XP_005662679.1

      UniProtKB/TrEMBL
      A0A4X1T096, F1S4Q9
      Related
      ENSSSCP00000061707.1, ENSSSCT00000085774.2
      Conserved Domains (2) summary
      pfam00786
      Location:30 → 83
      PBD; P21-Rho-binding domain
      pfam14957
      Location:102 → 253
      BORG_CEP; Cdc42 effector

    4. XM_003481240.4 → XP_003481288.1  cdc42 effector protein 3

      See identical proteins and their annotated locations for XP_003481288.1

      UniProtKB/TrEMBL
      A0A4X1T096, F1S4Q9
      Related
      ENSSSCP00000069011.1, ENSSSCT00000072526.1
      Conserved Domains (2) summary
      pfam00786
      Location:30 → 83
      PBD; P21-Rho-binding domain
      pfam14957
      Location:102 → 253
      BORG_CEP; Cdc42 effector

    5. XM_003481241.4 → XP_003481289.1  cdc42 effector protein 3

      See identical proteins and their annotated locations for XP_003481289.1

      UniProtKB/TrEMBL
      A0A4X1T096, F1S4Q9
      Related
      ENSSSCP00000072985.1, ENSSSCT00000082684.2
      Conserved Domains (2) summary
      pfam00786
      Location:30 → 83
      PBD; P21-Rho-binding domain
      pfam14957
      Location:102 → 253
      BORG_CEP; Cdc42 effector

    6. XM_005662620.3 → XP_005662677.1  cdc42 effector protein 3

      See identical proteins and their annotated locations for XP_005662677.1

      UniProtKB/TrEMBL
      A0A4X1T096, F1S4Q9
      Related
      ENSSSCP00000019797.1, ENSSSCT00000023650.4
      Conserved Domains (2) summary
      pfam00786
      Location:30 → 83
      PBD; P21-Rho-binding domain
      pfam14957
      Location:102 → 253
      BORG_CEP; Cdc42 effector

    RNA

    1. XR_002342770.1 RNA Sequence

    2. XR_002342771.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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