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    LRRC8A leucine rich repeat containing 8 VRAC subunit A [ Sus scrofa (pig) ]

    Gene ID: 100157556, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LRRC8Aprovided by VGNC
    Official Full Name
    leucine rich repeat containing 8 VRAC subunit Aprovided by VGNC
    Primary source
    VGNC:VGNC:98085
    See related
    Ensembl:ENSSSCG00000005664
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 19.4), subcutaneous adipose (RPKM 12.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See LRRC8A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (269209660..269238529)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (303258058..303270700)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene endonuclease G Neighboring gene SPOUT domain containing methyltransferase 1 Neighboring gene kynurenine aminotransferase 1 Neighboring gene phytanoyl-CoA dioxygenase domain containing 1 Neighboring gene dolichol kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    volume-regulated anion channel subunit LRRC8A
    Names
    leucine rich repeat containing 8 family member A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      269209660..269238529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001928850.6 → XP_001928885.1  volume-regulated anion channel subunit LRRC8A

      See identical proteins and their annotated locations for XP_001928885.1

      UniProtKB/TrEMBL
      A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61

    2. XM_013993913.2 → XP_013849367.1  volume-regulated anion channel subunit LRRC8A

      UniProtKB/TrEMBL
      A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61
      Related
      ENSSSCP00000006068.2, ENSSSCT00000006227.5

    3. XM_005660498.3 → XP_005660555.1  volume-regulated anion channel subunit LRRC8A

      See identical proteins and their annotated locations for XP_005660555.1

      UniProtKB/TrEMBL
      A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61

    4. XM_005660499.3 → XP_005660556.1  volume-regulated anion channel subunit LRRC8A

      See identical proteins and their annotated locations for XP_005660556.1

      UniProtKB/TrEMBL
      A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61
    Nucleotide Protein
    Heading Accession and Version

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