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    EMC10 ER membrane protein complex subunit 10 [ Sus scrofa (pig) ]

    Gene ID: 100526111, updated on 17-Aug-2024

    Summary

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    Official Symbol
    EMC10provided by VGNC
    Official Full Name
    ER membrane protein complex subunit 10provided by VGNC
    Primary source
    VGNC:VGNC:87669
    See related
    Ensembl:ENSSSCG00000039372
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 86.9), kidney (RPKM 82.8) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See EMC10 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (55316384..55322251)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (51165375..51171183)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene myosin binding protein C2 Neighboring gene golgi associated RAB2 interactor 5A Neighboring gene Josephin domain containing 2 Neighboring gene aspartate dehydrogenase domain containing

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of EMC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ER membrane protein complex subunit 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      55316384..55322251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003127366.5 → XP_003127414.1  ER membrane protein complex subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A480F0Z3, A0A4X1VQ45, A0A5G2QZS0

    2. XM_005664785.3 → XP_005664842.1  ER membrane protein complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A286ZQ46, A0A480I708, A0A481D656, A0A8D0TX99
      Related
      ENSSSCP00000033592.2, ENSSSCT00000066396.3
    Nucleotide Protein
    Heading Accession and Version

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