U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RFX1 regulatory factor X1 [ Sus scrofa (pig) ]

    Gene ID: 100511439, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RFX1provided by VGNC
    Official Full Name
    regulatory factor X1provided by VGNC
    Primary source
    VGNC:VGNC:92243
    See related
    Ensembl:ENSSSCG00000013764
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 8.4), spleen (RPKM 5.4) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RFX1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (65173559..65205551)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (65447808..65479696)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene interleukin 27 receptor subunit alpha Neighboring gene relaxin 3 Neighboring gene DDB1 and CUL4 associated factor 15 Neighboring gene podocan like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    MHC class II regulatory factor RFX1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      65173559..65205551
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021083705.1 → XP_020939364.1  MHC class II regulatory factor RFX1 isoform X5

      UniProtKB/TrEMBL
      A0A287AKP3, A0A8D2BXV7
      Conserved Domains (2) summary
      pfam02257
      Location:281 → 357
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:71 → 218
      RFX1_trans_act; RFX1 transcription activation region

    2. XM_013994672.2 → XP_013850126.1  MHC class II regulatory factor RFX1 isoform X4

      UniProtKB/TrEMBL
      A0A287AKP3, A0A8D2BXV7
      Conserved Domains (2) summary
      pfam02257
      Location:320 → 396
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:115 → 257
      RFX1_trans_act; RFX1 transcription activation region

    3. XM_021083704.1 → XP_020939363.1  MHC class II regulatory factor RFX1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1SGJ2, A0A8D1Q776, F1SD60
      Related
      ENSSSCP00000014633.2, ENSSSCT00000015038.3
      Conserved Domains (2) summary
      pfam02257
      Location:429 → 505
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:216 → 366
      RFX1_trans_act; RFX1 transcription activation region

    4. XM_005661239.3 → XP_005661296.1  MHC class II regulatory factor RFX1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0U967
      Conserved Domains (2) summary
      pfam02257
      Location:390 → 466
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:185 → 327
      RFX1_trans_act; RFX1 transcription activation region

    5. XM_013994671.2 → XP_013850125.1  MHC class II regulatory factor RFX1 isoform X3

      UniProtKB/TrEMBL
      A0A8D0U967
      Conserved Domains (2) summary
      pfam02257
      Location:354 → 430
      RFX_DNA_binding; RFX DNA-binding domain
      pfam04589
      Location:153 → 291
      RFX1_trans_act; RFX1 transcription activation region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.