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    SHD Src homology 2 domain containing transforming protein D [ Sus scrofa (pig) ]

    Gene ID: 100523303, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SHDprovided by VGNC
    Official Full Name
    Src homology 2 domain containing transforming protein Dprovided by VGNC
    Primary source
    VGNC:VGNC:92841
    See related
    Ensembl:ENSSSCG00000013503
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See SHD in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (74496771..74506855, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (74990300..74997236, complement)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene fibronectin type III and SPRY domain containing 1 Neighboring gene transmembrane and immunoglobulin domain containing 2 Neighboring gene YJU2 splicing factor homolog Neighboring gene Epstein-Barr virus induced 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphotyrosine residue binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SH2 domain-containing adapter protein D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      74496771..74506855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003123062.5 → XP_003123110.1  SH2 domain-containing adapter protein D

      UniProtKB/TrEMBL
      A0A4X1VS21, A0A5G2QG52, A0A8D0WUH7, A0A8D1EKH3, A0A8D1TI01, F1S7M3
      Related
      ENSSSCP00000014352.2, ENSSSCT00000014750.3
      Conserved Domains (1) summary
      cd10390
      Location:238 → 335
      SH2_SHD; Src homology 2 domain found in SH2 domain-containing adapter proteins D (SHD)
    Nucleotide Protein
    Heading Accession and Version

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