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    ASXL1 ASXL transcriptional regulator 1 [ Sus scrofa (pig) ]

    Gene ID: 100153847, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ASXL1provided by VGNC
    Official Full Name
    ASXL transcriptional regulator 1provided by VGNC
    Primary source
    VGNC:VGNC:95881
    See related
    Ensembl:ENSSSCG00000007248
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 9.5), ovary (RPKM 9.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ASXL1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (35985978..36067122)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (40908208..40984182)

    Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene PLAG1 like zinc finger 2 Neighboring gene protein O-fucosyltransferase 1 Neighboring gene kinesin family member 3B Neighboring gene nucleolar protein 4 like Neighboring gene COMM domain containing 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxisome proliferator activated receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PR-DUB complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative Polycomb group protein ASXL1
    Names
    additional sex combs like 1, transcriptional regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

      Range
      35985978..36067122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021077426.1 → XP_020933085.1  putative Polycomb group protein ASXL1 isoform X1

      UniProtKB/TrEMBL
      A0A287BSI2, A0A8D1IGK8, F1S518
      Related
      ENSSSCP00000059479.2, ENSSSCT00000051049.2
      Conserved Domains (4) summary
      pfam05066
      Location:11 → 83
      HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
      pfam13919
      Location:236 → 359
      ASXH; Asx homology domain
      pfam13922
      Location:1507 → 1540
      PHD_3; PHD domain of transcriptional enhancer, Asx
      cl00713
      Location:428 → 519
      Auto_anti-p27; Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

    2. XM_021077427.1 → XP_020933086.1  putative Polycomb group protein ASXL1 isoform X2

      UniProtKB/TrEMBL
      A0A8D1L3X0
      Related
      ENSSSCP00000044913.3, ENSSSCT00000053508.3
      Conserved Domains (4) summary
      pfam05066
      Location:11 → 83
      HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
      pfam13919
      Location:186 → 308
      ASXH; Asx homology domain
      pfam13922
      Location:1456 → 1489
      PHD_3; PHD domain of transcriptional enhancer, Asx
      cl26247
      Location:375 → 507
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    3. XM_021077428.1 → XP_020933087.1  putative Polycomb group protein ASXL1 isoform X3

      Conserved Domains (1) summary
      pfam05066
      Location:11 → 83
      HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    Nucleotide Protein
    Heading Accession and Version

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