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    DBP D-box binding PAR bZIP transcription factor [ Sus scrofa (pig) ]

    Gene ID: 100524747, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DBPprovided by VGNC
    Official Full Name
    D-box binding PAR bZIP transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:87167
    See related
    Ensembl:ENSSSCG00000003148
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in ovary (RPKM 9.7), kidney (RPKM 3.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See DBP in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (53986955..53993044, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (49734283..49740214, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene ribosomal protein L18 Neighboring gene sphingosine kinase 2 Neighboring gene uncharacterized LOC110261016 Neighboring gene carbonic anhydrase 11 Neighboring gene netrin 5 Neighboring gene galactoside 2-alpha-L-fucosyltransferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    D site-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      53986955..53993044 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003127286.6 → XP_003127334.2  D site-binding protein isoform X2

      See identical proteins and their annotated locations for XP_003127334.2

      UniProtKB/TrEMBL
      A0A4X1VUT2, F1RIP8
      Related
      ENSSSCP00000003411.2, ENSSSCT00000003494.4
      Conserved Domains (1) summary
      cd14695
      Location:254 → 313
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

    2. XM_013998600.2 → XP_013854054.1  D site-binding protein isoform X1

      Conserved Domains (1) summary
      cd14695
      Location:322 → 381
      bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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