U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NAA50 N-alpha-acetyltransferase 50, NatE catalytic subunit [ Sus scrofa (pig) ]

    Gene ID: 100513438, updated on 11-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    NAA50provided by VGNC
    Official Full Name
    N-alpha-acetyltransferase 50, NatE catalytic subunitprovided by VGNC
    Primary source
    VGNC:VGNC:104002
    See related
    Ensembl:ENSSSCG00000011917
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in psoas major muscle (RPKM 53.3), longissimus dorsi muscle (RPKM 41.2) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NAA50 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (146193186..146217739)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (155778467..155802802)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene GRAM domain containing 1C Neighboring gene ATPase H+ transporting V1 subunit A Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene upstream transcription factor family member 3 Neighboring gene uncharacterized LOC110256422 Neighboring gene SID1 transmembrane family member 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NatA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    N-alpha-acetyltransferase 50
    NP_001231736.1
    XP_005670258.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001244807.1 → NP_001231736.1  N-alpha-acetyltransferase 50

      See identical proteins and their annotated locations for NP_001231736.1

      Status: VALIDATED

      Source sequence(s)
      AK234091
      UniProtKB/TrEMBL
      A0A4X1SXS9, A0A8D0JSV3, A0A8D0PU33, A0A8D1XKC9, A0A8W4FCS2
      Conserved Domains (1) summary
      COG0456
      Location:10 → 145
      RimI; Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      146193186..146217739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005670201.3 → XP_005670258.1  N-alpha-acetyltransferase 50 isoform X1

      See identical proteins and their annotated locations for XP_005670258.1

      UniProtKB/TrEMBL
      A0A287ACR8, A0A4X1SXS9, A0A4X1SXY4, A0A8D0JSV3, A0A8W4FCS2
      Related
      ENSSSCP00000041793.1, ENSSSCT00000040413.2
      Conserved Domains (1) summary
      COG0456
      Location:9 → 144
      RimI; Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.