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    FKBP8 FKBP prolyl isomerase 8 [ Sus scrofa (pig) ]

    Gene ID: 100521950, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FKBP8provided by VGNC
    Official Full Name
    FKBP prolyl isomerase 8provided by VGNC
    Primary source
    VGNC:VGNC:88150
    See related
    Ensembl:ENSSSCG00000013905
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 147.7), subcutaneous adipose (RPKM 82.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See FKBP8 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (59256546..59267171)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (59035636..59046247, complement)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 Neighboring gene KxDL motif containing 1 Neighboring gene elongation factor for RNA polymerase II Neighboring gene inositol-3-phosphate synthase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase FKBP8
    Names
    FK506 binding protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      59256546..59267171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003123516.4 → XP_003123564.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1

      UniProtKB/TrEMBL
      A0A8D0PM43, A0A8D1XWC9
      Related
      ENSSSCP00000048283.1, ENSSSCT00000039332.3
      Conserved Domains (3) summary
      COG0457
      Location:217 → 340
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:232 → 268
      TPR; TPR repeat [structural motif]
      pfam00254
      Location:114 → 203
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

    2. XM_005652927.3 → XP_005652984.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X2

      UniProtKB/TrEMBL
      A0A8D0PM43, A0A8D1U8F1
      Conserved Domains (4) summary
      smart00028
      Location:307 → 340
      TPR; Tetratricopeptide repeats
      sd00006
      Location:231 → 267
      TPR; TPR repeat [structural motif]
      pfam00254
      Location:114 → 202
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
      pfam13414
      Location:274 → 338
      TPR_11; TPR repeat

    3. XM_021083478.1 → XP_020939137.1  peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1

      UniProtKB/TrEMBL
      A0A8D0PM43, A0A8D1XWC9
      Conserved Domains (3) summary
      COG0457
      Location:217 → 340
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:232 → 268
      TPR; TPR repeat [structural motif]
      pfam00254
      Location:114 → 203
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
    Nucleotide Protein
    Heading Accession and Version

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