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    POGLUT1 protein O-glucosyltransferase 1 [ Sus scrofa (pig) ]

    Gene ID: 100525611, updated on 17-Aug-2024

    Summary

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    Official Symbol
    POGLUT1provided by VGNC
    Official Full Name
    protein O-glucosyltransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:91623
    See related
    Ensembl:ENSSSCG00000032313
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 7.5), lung (RPKM 7.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See POGLUT1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (140763231..140793645, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (150078559..150093338, complement)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene desumoylating isopeptidase 2-like Neighboring gene translocase of inner mitochondrial membrane domain containing 1 Neighboring gene 60S ribosomal protein L37a-like Neighboring gene transmembrane protein 39A Neighboring gene Rho GTPase activating protein 31

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-xylosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein O-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein O-glucosyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      140763231..140793645 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021070325.1 → XP_020925984.1  protein O-glucosyltransferase 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1T355, A0A8D1I9R8, A0A8D1NWJ1, F1SPB0
      Related
      ENSSSCP00000012677.3, ENSSSCT00000013019.5
      Conserved Domains (1) summary
      pfam05686
      Location:49 → 388
      Glyco_transf_90; Glycosyl transferase family 90

    2. XM_021070327.1 → XP_020925986.1  protein O-glucosyltransferase 1 isoform X3

      UniProtKB/TrEMBL
      A0A8D1NWJ1
      Conserved Domains (1) summary
      cl23835
      Location:49 → 332
      Glyco_transf_90; Glycosyl transferase family 90

    3. XM_021070328.1 → XP_020925987.1  protein O-glucosyltransferase 1 isoform X4

      Conserved Domains (1) summary
      cl23835
      Location:49 → 243
      Glyco_transf_90; Glycosyl transferase family 90

    4. XM_021070326.1 → XP_020925985.1  protein O-glucosyltransferase 1 isoform X2

      UniProtKB/TrEMBL
      A0A287AER2, A0A4X1T360, A0A8D0TB53, A0A8D1NWI7
      Related
      ENSSSCP00000042328.1, ENSSSCT00000041017.2
      Conserved Domains (1) summary
      cl23835
      Location:49 → 368
      Glyco_transf_90; Glycosyl transferase family 90

    RNA

    1. XR_002337888.1 RNA Sequence

    2. XR_002337889.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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