U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC100154081 protein NipSnap homolog 3A [ Sus scrofa (pig) ]

    Gene ID: 100154081, updated on 16-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100154081
    Gene description
    protein NipSnap homolog 3A
    See related
    Ensembl:ENSSSCG00000053039
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    NIPSNAP3A
    Expression
    Ubiquitous expression in kidney (RPKM 19.2), subcutaneous adipose (RPKM 18.6) and 8 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100154081 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (246104936..246117913)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (275534266..275546971, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene olfactory receptor 13D1-like Neighboring gene ras-related protein R-Ras2 Neighboring gene ATP-binding cassette sub-family A member 1-like Neighboring gene protein NipSnap homolog 3A-like Neighboring gene ATP binding cassette subfamily A member 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein NipSnap homolog 3A
    Names
    nipsnap homolog 3A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      246104936..246117913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021067012.1 → XP_020922671.1  protein NipSnap homolog 3A

      UniProtKB/TrEMBL
      A0A287AYP1, A0A481C4F8, A0A4X1VE34, A0A4X1VF47, A0A8D0N7V4, A0A8D1W769
      Related
      ENSSSCP00000057134.1, ENSSSCT00000046165.3
      Conserved Domains (1) summary
      pfam07978
      Location:37 → 136
      NIPSNAP; NIPSNAP

    2. XM_003480559.4 → XP_003480607.1  protein NipSnap homolog 3A

      UniProtKB/TrEMBL
      A0A287AYP1, A0A481C4F8, A0A4X1VE34, A0A4X1VF47, A0A8D0N7V4, A0A8D1W769
      Conserved Domains (1) summary
      pfam07978
      Location:37 → 136
      NIPSNAP; NIPSNAP
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.