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    ZMAT2 zinc finger matrin-type 2 [ Sus scrofa (pig) ]

    Gene ID: 100621095, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZMAT2provided by VGNC
    Official Full Name
    zinc finger matrin-type 2provided by VGNC
    Primary source
    VGNC:VGNC:95176
    See related
    Ensembl:ENSSSCG00000029158
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 50.1), spleen (RPKM 41.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ZMAT2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (142410970..142417012)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (148355582..148361604)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene histidyl-tRNA synthetase 1 Neighboring gene histidyl-tRNA synthetase 2, mitochondrial Neighboring gene protocadherin alpha-1 Neighboring gene protocadherin alpha-2 Neighboring gene protocadherin alpha-C2 Neighboring gene protocadherin alpha-4 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger matrin-type protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      142410970..142417012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003354316.4 → XP_003354364.1  zinc finger matrin-type protein 2

      See identical proteins and their annotated locations for XP_003354364.1

      UniProtKB/TrEMBL
      A0A4X1SJ93, A0A8D1BDD3, I3LF90
      Related
      ENSSSCP00000022730.1, ENSSSCT00000027327.4
      Conserved Domains (1) summary
      smart00451
      Location:77 → 108
      ZnF_U1; U1-like zinc finger
    Nucleotide Protein
    Heading Accession and Version

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