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    ATG3 autophagy related 3 [ Sus scrofa (pig) ]

    Gene ID: 100157190, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATG3provided by VGNC
    Official Full Name
    autophagy related 3provided by VGNC
    Primary source
    VGNC:VGNC:85621
    See related
    Ensembl:ENSSSCG00000011930
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 40.9), ovary (RPKM 29.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ATG3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (147279110..147309597)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (156876859..156907063)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 B-like Neighboring gene coiled-coil domain containing 80 Neighboring gene solute carrier family 35 member A5 Neighboring gene B and T lymphocyte associated Neighboring gene proline synthase co-transcribed bacterial homolog protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Atg8-family ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like-conjugating enzyme ATG3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      147279110..147309597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003132682.6 → XP_003132730.3  ubiquitin-like-conjugating enzyme ATG3

      UniProtKB/TrEMBL
      A0A480PFQ0, A0A4X1STY4, A0A8D0IFU5, A0A8D0UTV4
      Related
      ENSSSCP00000012711.4, ENSSSCT00000013054.5
      Conserved Domains (3) summary
      pfam03986
      Location:8 → 133
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:204 → 265
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain
      pfam10381
      Location:286 → 309
      Autophagy_C; Autophagocytosis associated protein C-terminal
    Nucleotide Protein
    Heading Accession and Version

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