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    Platr8 pluripotency associated transcript 8 [ Mus musculus (house mouse) ]

    Gene ID: 100038454, updated on 17-Aug-2024

    Summary

    Official Symbol
    Platr8provided by MGI
    Official Full Name
    pluripotency associated transcript 8provided by MGI
    Primary source
    MGI:MGI:3652122
    See related
    Ensembl:ENSMUSG00000063751 AllianceGenome:MGI:3652122
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm13939
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Platr8 in Genome Data Viewer
    Location:
    2 E3; 2 56.65 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (109732741..109743664, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (109902396..109913319, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05359 Neighboring gene predicted gene, 54141 Neighboring gene STARR-positive B cell enhancer ABC_E9200 Neighboring gene STARR-positive B cell enhancer ABC_E813 Neighboring gene STARR-seq mESC enhancer starr_05361 Neighboring gene STARR-positive B cell enhancer ABC_E5957 Neighboring gene lin-7 homolog C, crumbs cell polarity complex component Neighboring gene STARR-seq mESC enhancer starr_05363 Neighboring gene leucine-rich repeat-containing G protein-coupled receptor 4 Neighboring gene STARR-positive B cell enhancer ABC_E5958 Neighboring gene coiled-coil domain containing 34 Neighboring gene coiled-coil domain containing 34, opposite strand

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033473.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845423
      Related
      ENSMUST00000146110.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      109732741..109743664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)