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    TSPAN3 tetraspanin 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 616881, updated on 1-Jan-2025

    Summary

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    Official Symbol
    TSPAN3provided by VGNC
    Official Full Name
    tetraspanin 3provided by VGNC
    Primary source
    VGNC:VGNC:36436
    See related
    BGD:BT16219; Ensembl:ENSBTAG00000002415
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TSPAN3 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (32177529..32204399, complement)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene reticulocalbin 2 Neighboring gene proline-serine-threonine phosphatase interacting protein 1 Neighboring gene uncharacterized LOC100847412 Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene ATP synthase subunit f, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC127862

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin-3
    Names
    tspan-3
    NP_001030564.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035487.1 → NP_001030564.1  tetraspanin-3

      See identical proteins and their annotated locations for NP_001030564.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102734
      UniProtKB/Swiss-Prot
      Q3SZR9
      UniProtKB/TrEMBL
      A0AAA9SFC1
      Related
      ENSBTAP00000003131.6, ENSBTAT00000003131.6
      Conserved Domains (2) summary
      cd03163
      Location:104 → 210
      TM4SF8_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:10 → 237
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      32177529..32204399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3SZR9.1 GenPept UniProtKB/Swiss-Prot:Q3SZR9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials