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    ZKSCAN5 zinc finger with KRAB and SCAN domains 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 516885, updated on 29-Jan-2025

    Summary

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    Official Symbol
    ZKSCAN5provided by VGNC
    Official Full Name
    zinc finger with KRAB and SCAN domains 5provided by VGNC
    Primary source
    VGNC:VGNC:107040
    See related
    BGD:BT27126; Ensembl:ENSBTAG00000049731
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZKSCAN5 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (36890058..36906420, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112444278 Neighboring gene zinc finger protein 655 Neighboring gene zinc finger protein 789 Neighboring gene zinc finger protein 394 Neighboring gene zinc finger protein 892 Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein with KRAB and SCAN domains 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193173.1 → NP_001180102.1  zinc finger protein with KRAB and SCAN domains 5

      See identical proteins and their annotated locations for NP_001180102.1

      Status: VALIDATED

      Source sequence(s)
      BC149240
      Related
      ENSBTAP00070035691.1, ENSBTAT00070060152.1
      Conserved Domains (5) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:540 → 832
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:552 → 572
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:389 → 413
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:222 → 282
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      36890058..36906420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015460457.3 → XP_015315943.2  zinc finger protein with KRAB and SCAN domains 5 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M6V8
      Conserved Domains (6) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:540 → 832
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:552 → 572
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:431 → 453
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:389 → 413
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:222 → 282
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_015460454.3 → XP_015315940.2  zinc finger protein with KRAB and SCAN domains 5 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M6V8
      Conserved Domains (6) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:540 → 832
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:552 → 572
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:431 → 453
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:389 → 413
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:222 → 282
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    3. XM_015460455.3 → XP_015315941.2  zinc finger protein with KRAB and SCAN domains 5 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M6V8
      Conserved Domains (6) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:540 → 832
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:552 → 572
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:431 → 453
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:389 → 413
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:222 → 282
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    4. XM_059881302.1 → XP_059737285.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M6V8

    5. XM_015460456.3 → XP_015315942.2  zinc finger protein with KRAB and SCAN domains 5 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M6V8
      Conserved Domains (6) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:540 → 832
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:552 → 572
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:431 → 453
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:389 → 413
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:222 → 282
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    6. XM_015460458.3 → XP_015315944.2  zinc finger protein with KRAB and SCAN domains 5 isoform X2

      Conserved Domains (6) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:539 → 831
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:551 → 571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:430 → 452
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:388 → 412
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:221 → 281
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein Strain
    Heading Accession and Version

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