U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG5515 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42875, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG5515provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039163
    Locus tag
    Dmel_CG5515
    See related
    AllianceGenome:FB:FBgn0039163
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5515
    Summary
    Predicted to be involved in cytoplasmic translation. Orthologous to human RWDD1 (RWD domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG5515 in Genome Data Viewer
    Location:
    95E8-95E8; 3-83 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24187724..24188896, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20013446..20014618, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Adenomatous polyposis coli 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene morgana Neighboring gene Structural maintenance of chromosomes 6 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. Dunn JG, et al. Elife, 2013 Dec 3. PMID 24302569, Free PMC Article
    2. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Phanse S, et al. Data Brief, 2016 Mar. PMID 26870755, Free PMC Article
    3. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
    4. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
    5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG5515-PA
    CG5515-PB
    CG5515-PC
    CG5515-PD

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      24187724..24188896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275972.1 → NP_001262901.1  uncharacterized protein Dmel_CG5515, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262901.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    2. NM_176554.2 → NP_788731.1  uncharacterized protein Dmel_CG5515, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788731.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Related
      FBpp0083960
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    3. NM_142970.3 → NP_651227.2  uncharacterized protein Dmel_CG5515, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651227.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Related
      FBpp0083959
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    4. NM_001300570.1 → NP_001287499.1  uncharacterized protein Dmel_CG5515, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287499.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95RT3 Q95RT3
    Q9VCB9 Q9VCB9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous