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    CG13627 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42941, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13627provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039217
    Locus tag
    Dmel_CG13627
    See related
    AllianceGenome:FB:FBgn0039217
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13627
    Summary
    Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of DNA methylation-dependent heterochromatin formation and regulation of DNA-templated transcription. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in embryonic hypopharynx; embryonic/larval tracheal dorsal trunk; embryonic/larval visceral tracheal branch; and ventral sensory complex primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13627 in Genome Data Viewer
    Location:
    96A17-96A18; 3-85 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24712780..24717430)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20538502..20543152)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Protoporphyrinogen oxidase Neighboring gene slowpoke Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene RNA polymerase II, I and III subunit L Neighboring gene tolkin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Novel Neuron-Specific Regulator of the V-ATPase in Drosophila. Dulac A, et al. eNeuro, 2021 Sep-Oct. PMID 34620624, Free PMC Article
    2. Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Zdobnov EM, et al. Science, 2002 Oct 4. PMID 12364792
    3. Extensive identification and analysis of conserved small ORFs in animals. Mackowiak SD, et al. Genome Biol, 2015 Sep 14. PMID 26364619, Free PMC Article
    4. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
    5. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Menoret D, et al. Genome Biol, 2013 Aug 23. PMID 23972280, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13627-PA
    CG13627-PB
    CG13627-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      24712780..24717430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143022.3 → NP_651279.1  uncharacterized protein Dmel_CG13627, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651279.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6AWM4, Q8IGT7, Q9VC50
      Related
      FBpp0084065

    2. NM_001300580.1 → NP_001287509.1  uncharacterized protein Dmel_CG13627, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287509.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4LHL1, Q6AWM4, Q8IGT7

    3. NM_170166.3 → NP_733032.2  uncharacterized protein Dmel_CG13627, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_733032.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IGT7, Q8IMV7
      Related
      FBpp0084066
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4LHL1 A0A0B4LHL1
    Q6AWM4 Q6AWM4
    Q8IGT7 Q8IGT7
    Q8IMV7 Q8IMV7
    Q9VC50 Q9VC50

    Gene LinkOut

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