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    Tmem267 transmembrane protein 267 [ Mus musculus (house mouse) ]

    Gene ID: 633640, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tmem267provided by MGI
    Official Full Name
    transmembrane protein 267provided by MGI
    Primary source
    MGI:MGI:3648543
    See related
    Ensembl:ENSMUSG00000074634 AllianceGenome:MGI:3648543
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm7120; EG633640
    Summary
    Predicted to be located in membrane. Is expressed in medial ganglionic eminence. Orthologous to human TMEM267 (transmembrane protein 267). [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: suggests misassembly
    Expression
    Biased expression in testis adult (RPKM 91.7), CNS E14 (RPKM 10.4) and 2 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Tmem267 in Genome Data Viewer
    Location:
    13 D2.3; 13 67.25 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (119624622..120071995)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (119488086..119610459)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4833420G17 gene Neighboring gene STARR-positive B cell enhancer ABC_E7292 Neighboring gene RIKEN cDNA 3110070M22 gene Neighboring gene polyadenylate binding protein-interacting protein 1 Neighboring gene STARR-seq mESC enhancer starr_35805 Neighboring gene predicted gene 9752 Neighboring gene C-C motif chemokine ligand 28 Neighboring gene predicted gene, 53794

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain. Cajigas I, et al. Mol Cell, 2018 Sep 20. PMID 30146317, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC29320, MGC118117

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 267
    Names
    transmembrane protein C5orf28 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039244.4 → NP_001034333.3  transmembrane protein 267

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 4. All four variants encode the same protein.
      Source sequence(s)
      AC163689, AC241593
      UniProtKB/Swiss-Prot
      Q3SYJ5, Q8VDR5
      UniProtKB/TrEMBL
      H3BJ86

    2. NM_001177666.3 → NP_001171137.2  transmembrane protein 267

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 4. All four variants encode the same protein.
      Source sequence(s)
      AC163689
      Consensus CDS
      CCDS56899.1
      UniProtKB/Swiss-Prot
      Q3SYJ5, Q8VDR5
      UniProtKB/TrEMBL
      H3BJ86
      Related
      ENSMUSP00000096751.5, ENSMUST00000099147.6

    3. NM_001370626.1 → NP_001357555.1  transmembrane protein 267

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 4. All four variants encode the same protein.
      Source sequence(s)
      AC163689, AC241593
      UniProtKB/Swiss-Prot
      Q3SYJ5, Q8VDR5
      UniProtKB/TrEMBL
      H3BJ86

    4. NM_001370627.1 → NP_001357556.1  transmembrane protein 267

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) represents the longest transcript. All four variants encode the same protein.
      Source sequence(s)
      AC163689, AC241593
      UniProtKB/Swiss-Prot
      Q3SYJ5, Q8VDR5
      UniProtKB/TrEMBL
      H3BJ86

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      119624622..120071995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VDR5.1 GenPept UniProtKB/Swiss-Prot:Q8VDR5

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