U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ccdc190 coiled-coil domain containing 190 [ Mus musculus (house mouse) ]

    Gene ID: 78465, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ccdc190provided by MGI
    Official Full Name
    coiled-coil domain containing 190provided by MGI
    Primary source
    MGI:MGI:1925715
    See related
    Ensembl:ENSMUSG00000070532 AllianceGenome:MGI:1925715
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700084C01Rik
    Summary
    Orthologous to human CCDC190 (coiled-coil domain containing 190). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 5.5), cortex adult (RPKM 4.1) and 8 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ccdc190 in Genome Data Viewer
    Location:
    1 H3; 1 76.84 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (169756172..169764816)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (169928599..169935318)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02979 Neighboring gene regulator of G-protein signaling 4 Neighboring gene predicted gene, 22114 Neighboring gene RIKEN cDNA 3110045C21 gene Neighboring gene STARR-positive B cell enhancer ABC_E501 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 7 Neighboring gene discoidin domain receptor family, member 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Brn3a and Nurr1 mediate a gene regulatory pathway for habenula development. Quina LA, et al. J Neurosci, 2009 Nov 11. PMID 19906978, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coiled-coil domain-containing protein 190

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033185.2 → NP_001028357.1  coiled-coil domain-containing protein 190 isoform 1

      See identical proteins and their annotated locations for NP_001028357.1

      Status: VALIDATED

      Source sequence(s)
      AK141447
      Consensus CDS
      CCDS15466.1
      UniProtKB/Swiss-Prot
      Q3URK1
      UniProtKB/TrEMBL
      B9EKE1
      Related
      ENSMUSP00000091908.4, ENSMUST00000094348.4
      Conserved Domains (1) summary
      pfam15768
      Location:9 → 274
      CC190; Coiled-coil domain-containing protein 190

    2. NM_001347138.1 → NP_001334067.1  coiled-coil domain-containing protein 190 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC139673
      Consensus CDS
      CCDS83630.1
      UniProtKB/TrEMBL
      B7ZWE2, B9EKE1, H3BLK0
      Related
      ENSMUSP00000135819.2, ENSMUST00000175731.3
      Conserved Domains (1) summary
      pfam15768
      Location:9 → 275
      CC190; Coiled-coil domain-containing protein 190

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      169756172..169764816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030243683.2 → XP_030099543.1  coiled-coil domain-containing protein 190 isoform X1

      UniProtKB/TrEMBL
      B7ZWE2, B9EKE1, H3BLK0
      Conserved Domains (1) summary
      pfam15768
      Location:9 → 275
      CC190; Coiled-coil domain-containing protein 190

    2. XM_030243685.2 → XP_030099545.1  coiled-coil domain-containing protein 190 isoform X2

      UniProtKB/Swiss-Prot
      Q3URK1
      UniProtKB/TrEMBL
      B9EKE1
      Conserved Domains (1) summary
      pfam15768
      Location:9 → 274
      CC190; Coiled-coil domain-containing protein 190

    3. XM_006497036.4 → XP_006497099.1  coiled-coil domain-containing protein 190 isoform X1

      See identical proteins and their annotated locations for XP_006497099.1

      UniProtKB/TrEMBL
      B7ZWE2, B9EKE1, H3BLK0
      Conserved Domains (1) summary
      pfam15768
      Location:9 → 275
      CC190; Coiled-coil domain-containing protein 190

    4. XM_006497037.5 → XP_006497100.1  coiled-coil domain-containing protein 190 isoform X1

      See identical proteins and their annotated locations for XP_006497100.1

      UniProtKB/TrEMBL
      B7ZWE2, B9EKE1, H3BLK0
      Conserved Domains (1) summary
      pfam15768
      Location:9 → 275
      CC190; Coiled-coil domain-containing protein 190
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3URK1.1 GenPept UniProtKB/Swiss-Prot:Q3URK1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials