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    Rpl30 ribosomal protein L30 [ Mus musculus (house mouse) ]

    Gene ID: 19946, updated on 27-Nov-2024

    Summary

    Official Symbol
    Rpl30provided by MGI
    Official Full Name
    ribosomal protein L30provided by MGI
    Primary source
    MGI:MGI:98037
    See related
    Ensembl:ENSMUSG00000058600 AllianceGenome:MGI:98037
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; defense response to other organism; and killing of cells of another organism. Located in cytoplasm. Part of cytosolic large ribosomal subunit. Is active in postsynaptic density. Is expressed in brain. Human ortholog(s) of this gene implicated in herpes simplex. Orthologous to human RPL30 (ribosomal protein L30). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in bladder adult (RPKM 355.7), liver E14 (RPKM 337.8) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Rpl30 in Genome Data Viewer
    Location:
    15 B3.1; 15 14.33 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (34440649..34443405, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (34440505..34443276, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene lysosomal-associated protein transmembrane 4B Neighboring gene eukaryotic translation initiation factor 4A2 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:34225853-34226040 Neighboring gene matrilin 2 Neighboring gene RIKEN cDNA 9430069I07 gene Neighboring gene STARR-seq mESC enhancer starr_38326 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:34372917-34373070 Neighboring gene predicted gene, 24523 Neighboring gene glutamate rich 5 Neighboring gene reactive intermediate imine deaminase A homolog

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC106425, MGC107559

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables selenocysteine insertion sequence binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in postsynaptic density EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ribosome NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    large ribosomal subunit protein eL30
    Names
    60S ribosomal protein L30

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163485.2NP_001156957.1  large ribosomal subunit protein eL30

      See identical proteins and their annotated locations for NP_001156957.1

      Status: VALIDATED

      Source sequence(s)
      AC126028
      Consensus CDS
      CCDS37057.1
      UniProtKB/Swiss-Prot
      P62889
      UniProtKB/TrEMBL
      Q497D7, Q58DZ3, Q5PR15
      Related
      ENSMUSP00000106014.2, ENSMUST00000079735.12
      Conserved Domains (1) summary
      PTZ00106
      Location:2107
      PTZ00106; 60S ribosomal protein L30; Provisional
    2. NM_009083.5NP_033109.1  large ribosomal subunit protein eL30

      See identical proteins and their annotated locations for NP_033109.1

      Status: VALIDATED

      Source sequence(s)
      AC126028
      Consensus CDS
      CCDS37057.1
      UniProtKB/Swiss-Prot
      P62889
      UniProtKB/TrEMBL
      Q497D7, Q58DZ3, Q5PR15
      Related
      ENSMUSP00000009039.6, ENSMUST00000009039.6
      Conserved Domains (1) summary
      PTZ00106
      Location:2107
      PTZ00106; 60S ribosomal protein L30; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      34440649..34443405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_001450.1: Suppressed sequence

      Description
      NG_001450.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.