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    Miat myocardial infarction associated transcript (non-protein coding) [ Mus musculus (house mouse) ]

    Gene ID: 330166, updated on 9-Dec-2024

    Summary

    Official Symbol
    Miatprovided by MGI
    Official Full Name
    myocardial infarction associated transcript (non-protein coding)provided by MGI
    Primary source
    MGI:MGI:2444886
    See related
    Ensembl:ENSMUSG00000097767 AllianceGenome:MGI:2444886
    Gene type
    ncRNA
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rncr2; gomafu; 3632434I06; A230057G18Rik
    Summary
    This gene encodes a spliced long non-coding RNA that may constitute a component of the nuclear matrix. This transcript has been associated with retinal cell fate determination. Altered expression of a similar gene in human has been associated with a susceptibility to myocardial infarction, and is involved in pathways that may contribute to the pathophysiology of schizophrenia. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Dec 2014]
    Expression
    Biased expression in CNS E11.5 (RPKM 194.2), CNS E14 (RPKM 144.8) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Miat in Genome Data Viewer
    Location:
    5 F; 5 54.59 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (112361094..112376814, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (112213228..112228948, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700016B01 gene Neighboring gene STARR-seq mESC enhancer starr_13994 Neighboring gene RIKEN cDNA 1700028D13 gene Neighboring gene VISTA enhancer mm1451 Neighboring gene predicted gene, 52821 Neighboring gene crystallin, beta A4 Neighboring gene crystallin, beta B1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003718.2 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses two alternate splice sites, compared to variant 1.
      Source sequence(s)
      AC123795
      Related
      ENSMUST00000182953.8
    2. NR_033657.1 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC123795
      Related
      ENSMUST00000181535.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      112361094..112376814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)