U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    vgrG1 [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 879511, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    vgrG1
    Primary source
    PseudoCap:PA0091
    Locus tag
    PA0091
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_002516.2 (110976..112907)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene secretion protein ClpV1 Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria. Hood RD, et al. Cell Host Microbe, 2010 Jan 21. PMID 20114026, Free PMC Article
    2. Type VI secretion system in Pseudomonas aeruginosa: secretion and multimerization of VgrG proteins. Hachani A, et al. J Biol Chem, 2011 Apr 8. PMID 21325275, Free PMC Article
    3. The structure of VgrG1 from Pseudomonas aeruginosa, the needle tip of the bacterial type VI secretion system. Spínola-Amilibia M, et al. Acta Crystallogr D Struct Biol, 2016 Jan. PMID 26894531
    4. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    5. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within protein secretion by the type VI secretion system IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within protein secretion by the type VI secretion system IGC
    Inferred from Genomic Context
    more info
    		 PubMed 
    acts_upstream_of_or_within protein secretion by the type VI secretion system IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of type VI protein secretion system complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of type VI protein secretion system complex IGC
    Inferred from Genomic Context
    more info
    		 PubMed 
    part_of type VI protein secretion system complex IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    type VI secretion system protein VgrG
    NP_248781.1
    • 'Product name confidence: class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known).'

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      110976..112907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_248781.1 type VI secretion system protein VgrG [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_248781.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5E5R5E3, A0A9P1R627
      Conserved Domains (1) summary
      TIGR03361
      Location:9 → 520
      VI_Rhs_Vgr; type VI secretion system Vgr family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9I741.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases