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    SNR11 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164951, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR11
    Primary source
    SGD:S000007293
    Locus tag
    YNCM0031W
    See related
    AllianceGenome:SGD:S000007293
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Located in nucleolus. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR11 in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (652275..652532)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene mitochondrial 54S ribosomal protein YmL24/YmL14 Neighboring gene ribosomal 60S subunit protein L36A Neighboring gene Cmc4p Neighboring gene Icy1p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SSB-1 of the yeast Saccharomyces cerevisiae is a nucleolar-specific, silver-binding protein that is associated with the snR10 and snR11 small nuclear RNAs. Clark MW, et al. J Cell Biol, 1990 Nov. PMID 2121740, Free PMC Article
    2. A diverse set of nuclear RNAs transfer between nuclei of yeast heterokaryons. Olson BL, et al. Yeast, 2003 Jul 30. PMID 12868058
    3. The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Lafontaine DL, et al. Genes Dev, 1998 Feb 15. PMID 9472021, Free PMC Article
    4. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article
    5. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Schattner P, et al. Nucleic Acids Res, 2004. PMID 15306656, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at position U2416

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA pseudouridylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      652275..652532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132246.1 RNA Sequence

      Status: REVIEWED

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