Sbspon somatomedin B and thrombospondin, type 1 domain containing [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Sbsponprovided by MGI
Official Full Name: somatomedin B and thrombospondin, type 1 domain containingprovided by MGI
Primary source: MGI:MGI:2684952
See related: Ensembl:ENSMUSG00000032719 AllianceGenome:MGI:2684952
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm106; Rpesp
Summary: Predicted to be located in extracellular region. Is expressed in reproductive system. Orthologous to human SBSPON (somatomedin B and thrombospondin type 1 domain containing). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Broad expression in adrenal adult (RPKM 3.5), ovary adult (RPKM 3.2) and 18 other tissues See more
Orthologs: human all
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Genomic context

Location:: 1 A3; 1 4.89 cM

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	1	NC_000067.7 (15924086..15962946, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	1	NC_000067.6 (15853862..15892722, complement)

Chromosome 1 - NC_000067.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: somatomedin-B and thrombospondin type-1 domain-containing protein

Names: RPE-spondin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001033288.3 → NP_001028460.1 somatomedin-B and thrombospondin type-1 domain-containing protein precursor

Status: PROVISIONAL

Source sequence(s)

AC109269

Consensus CDS

CCDS14828.1

UniProtKB/Swiss-Prot

B2RVH7, Q3UPR9

Related

ENSMUSP00000047730.5, ENSMUST00000040695.5