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    CG5921 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31538, updated on 9-Dec-2024

    Summary

    Official Symbol
    CG5921provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0029835
    Locus tag
    Dmel_CG5921
    See related
    AllianceGenome:FB:FBgn0029835
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5921
    Summary
    Predicted to enable spectrin binding activity. Predicted to be involved in G2/M transition of mitotic cell cycle. Predicted to be located in apical part of cell. Predicted to be part of stereocilia ankle link complex. Predicted to be active in cilium; plasma membrane; and stereocilium tip. Human ortholog(s) of this gene implicated in Usher syndrome; Usher syndrome type 1; Usher syndrome type 1C; and autosomal recessive nonsyndromic deafness 18A. Orthologous to human USH1C (USH1 protein network component harmonin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See CG5921 in Genome Data Viewer
    Location:
    5D3-5D3; 1-15 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (6050828..6065646)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5944861..5959679)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Malignant T cell amplified sequence 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Tetraspanin 5D

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables spectrin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in G2/M transition of mitotic cell cycle ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in apical part of cell ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of stereocilia ankle link complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in stereocilium tip IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein
    Names
    CG5921-PC
    CG5921-PD
    CG5921-PE

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      6050828..6065646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132062.3NP_572290.2  uncharacterized protein Dmel_CG5921, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572290.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRR2
      Conserved Domains (1) summary
      cd00992
      Location:82152
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    2. NM_167058.3NP_727061.2  uncharacterized protein Dmel_CG5921, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_727061.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W443
      Conserved Domains (1) summary
      cd00992
      Location:82152
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    3. NM_001272336.1NP_001259265.1  uncharacterized protein Dmel_CG5921, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259265.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PJ67
      Conserved Domains (1) summary
      cd00992
      Location:82152
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...