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    lncRNA:CR42651 long non-coding RNA::CR42651 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 14462440, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lncRNA:CR42651provided by FlyBase
    Official Full Name
    long non-coding RNA::CR42651provided by FlyBase
    Primary source
    FLYBASE:FBgn0261503
    Locus tag
    Dmel_CR42651
    See related
    AllianceGenome:FB:FBgn0261503
    Gene type
    ncRNA
    RNA name
    lncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG42651; CR42651; Dmel\CR42651; pri-mir-10
    Summary
    Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lncRNA:CR42651 in Genome Data Viewer
    Location:
    84A5-84A5; 3-48 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (6808796..6816379, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2634518..2642050, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA::CR42721 Neighboring gene long non-coding RNA:CR43435 Neighboring gene Deformed Neighboring gene long non-coding RNA:CR45915 Neighboring gene mir-10 stem loop Neighboring gene transfer RNA:Lysine-TTT 2-1 Neighboring gene Signal recognition particle 7SL RNA CR42652

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three Drosophila Hox complex microRNAs do not have major effects on expression of evolutionarily conserved Hox gene targets during embryogenesis. Lemons D, et al. PLoS One, 2012. PMID 22393361, Free PMC Article
    2. Tis11 mediated mRNA decay promotes the reacquisition of Drosophila intestinal stem cell quiescence. McClelland L, et al. Dev Biol, 2017 Jun 1. PMID 28445691, Free PMC Article
    3. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
    4. Comparative Expression Dynamics of Intergenic Long Noncoding RNAs in the Genus Drosophila. Nyberg KG, et al. Genome Biol Evol, 2016 Jun 27. PMID 27189981, Free PMC Article
    5. The Drosophila embryo at single-cell transcriptome resolution. Karaiskos N, et al. Science, 2017 Oct 13. PMID 28860209

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    • lncRNA:CR42651-RB; Dmel\lncRNA:CR42651-RB; CR42651-RB; Dmel\CR42651-RB

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RISC complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      6808796..6816379 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_073987.2 RNA Sequence

      Status: REVIEWED

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials