U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG3294 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33677, updated on 9-Dec-2024

    Summary

    Official Symbol
    CG3294provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031628
    Locus tag
    Dmel_CG3294
    See related
    AllianceGenome:FB:FBgn0031628
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg3294; Dmel\CG3294
    Summary
    Predicted to enable mRNA binding activity and pre-mRNA 3'-splice site binding activity. Involved in wound healing. Predicted to be part of U12-type spliceosomal complex and U2AF complex. Human ortholog(s) of this gene implicated in acute myeloid leukemia and myelodysplastic syndrome. Orthologous to human ZRSR2P1 (ZRSR2 pseudogene 1) and ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CG3294 in Genome Data Viewer
    Location:
    25A6-25A6; 2-13 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (4794549..4796581)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (4794549..4796581)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene factor of interpulse interval Neighboring gene uncharacterized protein Neighboring gene schlaff Neighboring gene long non-coding RNA:CR45297

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables pre-mRNA 3'-splice site binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables pre-mRNA 3'-splice site binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in spliceosomal complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in wound healing HMP PubMed 
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of U2AF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of U2AF complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein
    Names
    CG3294-PA
    CG3294-PB

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      4794549..4796581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_175962.1NP_787976.1  uncharacterized protein Dmel_CG3294, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_787976.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q86BN2, Q8MR40
      Related
      FBpp0077074, FBtr0077382
      Conserved Domains (2) summary
      pfam00642
      Location:165189
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl17169
      Location:197303
      RRM_SF; RNA recognition motif (RRM) superfamily
    2. NM_135013.4NP_608857.2  uncharacterized protein Dmel_CG3294, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608857.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VR26
      Conserved Domains (2) summary
      TIGR02794
      Location:28123
      tolA_full; TolA protein
      cl17169
      Location:197303
      RRM_SF; RNA recognition motif (RRM) superfamily