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    VepD Ventrally-expressed protein D [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 117331, updated on 9-Dec-2024

    Summary

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    Official Symbol
    VepDprovided by FlyBase
    Official Full Name
    Ventrally-expressed protein Dprovided by FlyBase
    Primary source
    FLYBASE:FBgn0053200
    Locus tag
    Dmel_CG33200
    See related
    AllianceGenome:FB:FBgn0053200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:CL57; CG33200; D; Dmel\CG33200; ventrally-expressed-protein-D; vepD
    Summary
    Is expressed in mesoderm and mesoderm anlage. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See VepD in Genome Data Viewer
    Location:
    58D7-58D7; 2-99 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22408525..22409342)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18296030..18296847)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene babos Neighboring gene long non-coding RNA:CR44760 Neighboring gene uncharacterized protein Neighboring gene quaking related 58E-3 Neighboring gene quaking related 58E-1 Neighboring gene DNA polymerase epsilon subunit 4 Neighboring gene antisense RNA:CR45152 Neighboring gene quaking related 58E-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ChIP-nexus enables improved detection of in vivo transcription factor binding footprints. He Q, et al. Nat Biotechnol, 2015 Apr. PMID 25751057, Free PMC Article
    2. Identification of novel genes in Drosophila reveals the complex regulation of early gene activity in the mesoderm. Casal J, et al. Proc Natl Acad Sci U S A, 1996 Sep 17. PMID 8816799, Free PMC Article
    3. A conserved role for Snail as a potentiator of active transcription. Rembold M, et al. Genes Dev, 2014 Jan 15. PMID 24402316, Free PMC Article
    4. Inferring spatial and signaling relationships between cells from single cell transcriptomic data. Cang Z, et al. Nat Commun, 2020 Apr 29. PMID 32350282, Free PMC Article
    5. Tissue-specific regulation of translational readthrough tunes functions of the traffic jam transcription factor. Karki P, et al. Nucleic Acids Res, 2022 Jun 24. PMID 34897510, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Ventrally-expressed protein D
    Names
    CG33200-PA
    CG33200-PB
    CG33200-PC
    VepD-PA
    VepD-PB
    VepD-PC
    ventrally expressed protein-D
    ventrally-expressed-protein-D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      22408525..22409342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299791.1 → NP_001286720.1  Ventrally-expressed protein D, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286720.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9N2P6
      UniProtKB/TrEMBL
      A0A0B4K868

    2. NM_001259530.2 → NP_001246459.1  Ventrally-expressed protein D, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246459.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9N2P6
      UniProtKB/TrEMBL
      A0A0B4K868

    3. NM_176245.4 → NP_788425.1  Ventrally-expressed protein D, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788425.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9N2P6
      UniProtKB/TrEMBL
      A0A0B4K868
      Related
      FBpp0071737
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4K868 A0A0B4K868
    Q9N2P6.1 Q9N2P6

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