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    Rep15 RAB15 effector protein [ Mus musculus (house mouse) ]

    Gene ID: 66532, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rep15provided by MGI
    Official Full Name
    RAB15 effector proteinprovided by MGI
    Primary source
    MGI:MGI:1913782
    See related
    Ensembl:ENSMUSG00000040121 AllianceGenome:MGI:1913782
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210417D09Rik
    Summary
    Predicted to be involved in receptor recycling and transferrin transport. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in endosome membrane and recycling endosome. Orthologous to human REP15 (RAB15 effector protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Rep15 in Genome Data Viewer
    Location:
    6 G3; 6 77.7 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (146934035..146935016)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (147032537..147033518)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene PTPRF interacting protein, binding protein 1 (liprin beta 1) Neighboring gene RIKEN cDNA 1700034J05 gene Neighboring gene predicted gene, 35876 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:146991206-146991315 Neighboring gene mitochondrial ribosomal protein S35 Neighboring gene STARR-seq mESC enhancer starr_17814 Neighboring gene MANSC domain containing 4

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in receptor recycling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in receptor recycling IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in receptor recycling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in transferrin transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in transferrin transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transferrin transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in early endosome membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in recycling endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in recycling endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in recycling endosome ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025620.2NP_079896.1  rab15 effector protein

      See identical proteins and their annotated locations for NP_079896.1

      Status: VALIDATED

      Source sequence(s)
      AK008892, AV081051
      Consensus CDS
      CCDS20704.1
      UniProtKB/Swiss-Prot
      Q8R1M9, Q9D7R5, Q9D7T1
      Related
      ENSMUSP00000037503.5, ENSMUST00000036194.6
      Conserved Domains (1) summary
      pfam15208
      Location:1230
      Rab15_effector; Rab15 effector

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      146934035..146935016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)